Insertion junction: CLIP2.006839_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.006839
Chromosome:chromosome 4
Location:2372273
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g221200 CGL109 Conserved in the Green Lineage; (1 of 1) IPR001005//IPR001965//IPR009057//IPR011011//IPR013083//IPR017877 - SANT/Myb domain // Zinc finger, PHD-type // Homeodomain-like // Zinc finger, FYVE/PHD-type // Zinc finger, RING/FYVE/PHD-type // Myb-like domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGACACACCGCCGCATGTACAGCTTCGTATGCAACACATGCGCTTGCGC
Internal bar code:GTAAGCCTGTCTCAAGGAGCTC

Confirmation - LEAP-Seq

LEAP-Seq distance:662
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:CTCCTTCCCCCTACAGAGCT
Suggested primer 2:CCGTCACTGGTTGTACTGCT