Insertion junction: CLIP2.006946_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.006946
Chromosome:chromosome 12
Location:2040751
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g510400 RBD4,CPLD30 Conserved in the Plant Lineage and Diatoms; (1 of 4) IPR024934 - Rubredoxin-like domain 3'UTR
Cre12.g801374 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAGCACTGTGACTTGCAAAAACGGGTGCATACTTTCCATCGTGAATTGAA
Internal bar code:TCTTCGGAGGAATCCTAATCTC

Confirmation - LEAP-Seq

LEAP-Seq distance:510
LEAP-Seq percent confirming:17.5
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:33
LEAP-Seq n unique pos:40

Suggested primers for confirmation by PCR

Suggested primer 1:AGGCCCATATCCTCTGGTGT
Suggested primer 2:GAACCCTGCCATGCACTTTG