Insertion junction: CLIP2.006971_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.006971
Chromosome:chromosome 17
Location:67746
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g696300 (1 of 1) PTHR12360//PTHR12360:SF1 - NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 // NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTAATTGCCTCAGCCCGAGTAACAGCCAGCTGCATGAGCTTGCCCGACCC
Internal bar code:GGTTAGATTATCACGATCAGAC

Confirmation - LEAP-Seq

LEAP-Seq distance:1526
LEAP-Seq percent confirming:38.8889
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:22
LEAP-Seq n unique pos:36

Suggested primers for confirmation by PCR

Suggested primer 1:CTATTGCGGGCTCACATTGC
Suggested primer 2:CACACACACTGAGCTCGACT