Insertion junction: CLIP2.007016_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.007016
Chromosome:chromosome 1
Location:2626748
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g015600 (1 of 1) PTHR23346//PTHR23346:SF7 - TRANSLATIONAL ACTIVATOR GCN1-RELATED // TRANSLATIONAL ACTIVATOR GCN1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TATGCTTGATATACTCTCTCTACTCCCACCCCTTCAGTTCTTAACGCGGC
Internal bar code:TATGGGACTCGGGGATCGTTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1940
LEAP-Seq percent confirming:48.5714
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:18
LEAP-Seq n unique pos:35

Suggested primers for confirmation by PCR

Suggested primer 1:TCCTCAAGTGCCTCAACGAC
Suggested primer 2:CTTGATGGCGTCGGTGAAGG