Insertion junction: CLIP2.007146_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.007146
Chromosome:chromosome 12
Location:6598507
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g538700 CPLD62 Conserved in the Plant Lineage and Diatoms; (1 of 2) PF07766 - LETM1-like protein (LETM1) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTGAGGCTTCGATACGCGCTGAGGCTCCGTTACGCGCAGCTTCTAAGGG
Internal bar code:GTAGTTATCACAGGGTACACCC

Confirmation - LEAP-Seq

LEAP-Seq distance:857
LEAP-Seq percent confirming:5.88235
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:16
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:ATTTCACAGCACCAAACGCC
Suggested primer 2:GACGTAGATCGGCGTTGCTA