Insertion junction: CLIP2.007177_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.007177
Chromosome:chromosome 6
Location:4749286
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g279500 CPL6 Conserved in the Plant Lineage; (1 of 1) PTHR15852:SF8 - CHAPERONE PROTEIN DNAJ-LIKE PROTEIN 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAATTGTTTTGGAGTCGATGGACCGCACGCGCGAGCTGGCAGGGTGTAGA
Internal bar code:GGCGGTAATGCATATACTGAGC

Confirmation - LEAP-Seq

LEAP-Seq distance:3777
LEAP-Seq percent confirming:26.3158
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:14
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:CCTAGCTTCCTTCTCGAGCG
Suggested primer 2:CTCCCTCCAACACACACTCC