Insertion junction: CLIP2.007311_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.007311
Chromosome:chromosome 5
Location:2457525
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g238950 CGLD33 (1 of 5) 2.1.1.34 - tRNA (guanosine(18)-2'-O)-methyltransferase / tRNA (Gm18) methyltransferase; Conserved in the Green Lineage and Diatoms 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCCAGTTCCTTGAGTGGAAACCCGTTCCGGACATGCACCACCCGGAAGA
Internal bar code:GCGGTTATTCCTCACTAGCGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1031
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:31
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:31

Suggested primers for confirmation by PCR

Suggested primer 1:TACAAGTTCGTGGTGGGTCG
Suggested primer 2:TATGCGGCTTGGGGGAAATT