Insertion junction: CLIP2.007331_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.007331
Chromosome:chromosome 8
Location:2510935
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g372550 CDKB1,DIV48 plant specific cyclin dependent kinase; (1 of 1) K07760 - cyclin-dependent kinase [EC:2.7.11.22] (CDK) 3'UTR
Cre08.g372600 (1 of 58) PTHR12393//PTHR12393:SF6 - SPHINGOMYELIN PHOSPHODIESTERASE RELATED // SPHINGOMYELIN PHOSPHODIESTERASE 2 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACTAATCATGTTTGTGCTGGAGCCCGAAGGCGGCTGCACATGCCACAGG
Internal bar code:ATGGAGAATATTGAACAACGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:4091
LEAP-Seq percent confirming:76.1905
LEAP-Seq n confirming:128
LEAP-Seq n nonconfirming:40
LEAP-Seq n unique pos:168

Suggested primers for confirmation by PCR

Suggested primer 1:GCTACGTGGGTATCTGAGGC
Suggested primer 2:AATTGCGTGGTGAGTTGTGC