Insertion junction: CLIP2.007563_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.007563
Chromosome:chromosome 3
Location:5479369
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g184500 (1 of 2) PTHR33925:SF3 - PROTEIN ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, CHLOROPLASTIC intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCTTGAGGTTCGGTTGTCACTTCCGTACCTGGGTCAGCCAGCGCTCCGT
Internal bar code:TTTACTTGATGCCGACGAGACT

Confirmation - LEAP-Seq

LEAP-Seq distance:3271
LEAP-Seq percent confirming:98.8372
LEAP-Seq n confirming:85
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:86

Suggested primers for confirmation by PCR

Suggested primer 1:AAGAGGTGGTCGAGCTGTTG
Suggested primer 2:TCGAAGTCCTCAACTGCCAC