Insertion junction: CLIP2.007598_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.007598
Chromosome:chromosome 7
Location:5813687
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g353500 CGLD5A ethylene response element DNA-binding domain containing protein; (1 of 1) PTHR31190:SF30 - ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15-RELATED 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACTCGGATACAGCGGGCTTGGCGGCCTGTTTGCGATGGACTTCATCGAG
Internal bar code:GGGCTCCTTACGGCGTACGTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:237
LEAP-Seq percent confirming:20.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:CTGCTGTTGCTGTTGTTGCT
Suggested primer 2:GCGACTGCGTAATTCGTGTC