Insertion junction: CLIP2.007605_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.007605
Chromosome:chromosome 4
Location:2856001
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g224300 CGL84 (1 of 22) PTHR10994 - RETICULON; Conserved in the Green Lineage CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGGGACAAAGGTGGGCGCTCGTCCGGGCAGCGGTTCGTGGGTTGATCTG
Internal bar code:GGTGTACCATGTTCCAGAATTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1881
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:TTCCGTCCACCACCAATCAG
Suggested primer 2:CACGCCTCAAGTATGCATGC