Insertion junction: CLIP2.007644_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.007644
Chromosome:chromosome 8
Location:3469388
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g378650 CGl131 (1 of 18) IPR011051 - RmlC-like cupin domain; Conserved in the Green Lineage intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GACGAGGTGGTGGGGTTGGGGCTTCAGGTATGCTAGCTAGGTGATGCAGG
Internal bar code:GTGTCGTCAGGGGAAATGTAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:2272
LEAP-Seq percent confirming:85.7143
LEAP-Seq n confirming:42
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:49

Suggested primers for confirmation by PCR

Suggested primer 1:TCCGGTAGTCGTGTGTGTTG
Suggested primer 2:AGTGTCCGTCAAGGTCGTTC