Insertion junction: CLIP2.007669_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.007669
Chromosome:chromosome 3
Location:2071211
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g156150 HEL13 (1 of 1) K14776 - ATP-dependent RNA helicase DDX10/DBP4 [EC:3.6.4.13] (DDX10, DBP4); DEAD/DEAH box helicase 3'UTR
Cre03.g156200 (1 of 1) IPR001304//IPR016186//IPR016187 - C-type lectin // C-type lectin-like // C-type lectin fold 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGCCGCCGCGCTCCCAAAAGCTGCAAACCAGTCCTGCACTAAAACATAG
Internal bar code:AGCCCGGGATCTCGTAGAGTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1375
LEAP-Seq percent confirming:83.3333
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:CAACCAACGTGTGTCTGCAG
Suggested primer 2:CGATCTCAATAGCCCAGCGT