Insertion junction: CLIP2.007670_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.007670
Chromosome:chromosome 15
Location:5414407
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g733950 CGL152 (1 of 90) PF03372 - Endonuclease/Exonuclease/phosphatase family (Exo_endo_phos); Conserved in the Green Lineage intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGCAGGGAATCGGAGCCGTTGGCTGCGTGGGGCCTGGTGGAGGAGCACAC
Internal bar code:CGGGTCTGGCGTTCTCGGGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:546
LEAP-Seq percent confirming:82.3529
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:TCACGTTCGACCACTGGAAG
Suggested primer 2:GCAGATTTTCCCTGAGGCCT