Insertion junction: CLIP2.007708_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.007708
Chromosome:chromosome 15
Location:5414206
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre17.g733950 CGL152 (1 of 90) PF03372 - Endonuclease/Exonuclease/phosphatase family (Exo_endo_phos); Conserved in the Green Lineage CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGGTGCTGCTGCGTGGCGTGAAGGAGGTGCGGGAGAAAGGAAAGGGGGG
Internal bar code:TCTTTTATGGAGTCCCGTTCTA

Confirmation - LEAP-Seq

LEAP-Seq distance:258
LEAP-Seq percent confirming:80.0
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:GCAGATTTTCCCTGAGGCCT
Suggested primer 2:TCACGTTCGACCACTGGAAG