Insertion junction: CLIP2.007744_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.007744
Chromosome:chromosome 14
Location:1943112
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre14.g620500 (1 of 6) IPR001471//IPR016177 - AP2/ERF domain // DNA-binding domain 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTCTTTGGGGGTCCATGCGTTGCTTGGGGCCTGAACGGTATGGGCCCCG
Internal bar code:GGCATAGTGTATTAACTGGACG

Confirmation - LEAP-Seq

LEAP-Seq distance:1039
LEAP-Seq percent confirming:33.3333
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:CTGCTTCATCGGCTGATTGC
Suggested primer 2:CGCTGTGCAATCGGTACATG