Insertion junction: CLIP2.007804_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.007804
Chromosome:chromosome 5
Location:2564931
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g239500 FAP38 (1 of 1) IPR000104//IPR009068 - Antifreeze protein, type I // S15/NS1, RNA-binding; Flagellar Associated Protein 38 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTAGAGCTGGGTACGTGGGGACGGAGGTCACAGAAAACAGGGCCTGACGC
Internal bar code:ATTGAGCTAATCGCCCCCTATG

Confirmation - LEAP-Seq

LEAP-Seq distance:1176
LEAP-Seq percent confirming:19.4444
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:29
LEAP-Seq n unique pos:36

Suggested primers for confirmation by PCR

Suggested primer 1:GTCAGAGTTGCACCTTCCGA
Suggested primer 2:GGAGGTCAGCTTGGCAATCT