Insertion junction: CLIP2.007900_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.007900
Chromosome:chromosome 13
Location:4544222
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g603300 (1 of 781) IPR000104 - Antifreeze protein, type I CDS
lncRNA_TCONS_00191658 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGCAGTGGCGGTTGAGGTGCTACAGGCCACGCCCTTGCGGCCTGCTGCG
Internal bar code:GGCTCTAACAGCTGGACTTTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:2927
LEAP-Seq percent confirming:93.9394
LEAP-Seq n confirming:31
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:33

Suggested primers for confirmation by PCR

Suggested primer 1:TTAACGCTAGCGCCAGGAAT
Suggested primer 2:GGACGGGAATATCGAGCGTT