Insertion junction: CLIP2.008006_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.008006
Chromosome:plastome
Location:195131
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802335 rpoC1,ChreCp069,2717049 (1 of 2) K03046 - DNA-directed RNA polymerase subunit beta' (rpoC); RNA polymerase beta' chain 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGTTAACTCACTTGTGAGTTAACATATATAATCCATGACCAGCTTTTTT
Internal bar code:GCAGGGAGTCTCGCATAATGCT

Confirmation - LEAP-Seq

LEAP-Seq distance:63
LEAP-Seq percent confirming:8.33333
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:CTCCCATGCTTTGCCCCTTA
Suggested primer 2:AGTTGCTGCTTCGGGAAGAT