Insertion junction: CLIP2.008096_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.008096
Chromosome:chromosome 7
Location:1697558
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g325711 (1 of 2) K19363 - lipopolysaccharide-induced tumor necrosis factor-alpha factor (LITAF) outside_mRNA
Cre07.g800783 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GATCCCGCCCACACAGCTGACGCCGCCGCAGCCAGGCGTCAACCCCGTCG
Internal bar code:AGCAGGCGATCACCAACCTTCC

Confirmation - LEAP-Seq

LEAP-Seq distance:909
LEAP-Seq percent confirming:63.6364
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:TATACCCCGGACTCAGCACA
Suggested primer 2:TTTGGCAGGAGGTAAGCTGG