Insertion junction: CLIP2.008118_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.008118
Chromosome:chromosome 9
Location:4586691
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g401404 (1 of 41) PTHR32523//PTHR32523:SF8 - FAMILY NOT NAMED // PHYTOL KINASE 1, CHLOROPLASTIC intron
Cre09.g401441 (1 of 41) PTHR32523//PTHR32523:SF8 - FAMILY NOT NAMED // PHYTOL KINASE 1, CHLOROPLASTIC 3'UTR_intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTTCCAACTCCTCAAGCACCGCAAAATGCATGTACACCGTATGGCACGGA
Internal bar code:GCTTCCAGGTGTGCCTCAAGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:3680
LEAP-Seq percent confirming:97.8261
LEAP-Seq n confirming:45
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:46

Suggested primers for confirmation by PCR

Suggested primer 1:TCGCGGTGCATCGATGATTA
Suggested primer 2:CACTCTGTATTGCCAGGCCA