Insertion junction: CLIP2.008118_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.008118
Chromosome:chromosome 9
Location:4586693
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g401404 (1 of 41) PTHR32523//PTHR32523:SF8 - FAMILY NOT NAMED // PHYTOL KINASE 1, CHLOROPLASTIC intron
Cre09.g401441 (1 of 41) PTHR32523//PTHR32523:SF8 - FAMILY NOT NAMED // PHYTOL KINASE 1, CHLOROPLASTIC 3'UTR_intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCCCACCCCTTCGGGCGTGCGGCCTGTTTTCCTTGCCTCCAGCCTGCCT
Internal bar code:CTCCTATTCTATGTTGAACCGA

Confirmation - LEAP-Seq

LEAP-Seq distance:3625
LEAP-Seq percent confirming:99.3711
LEAP-Seq n confirming:158
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:159

Suggested primers for confirmation by PCR

Suggested primer 1:CACTCTGTATTGCCAGGCCA
Suggested primer 2:TCGCGGTGCATCGATGATTA