Insertion junction: CLIP2.008185_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.008185
Chromosome:chromosome 6
Location:2380006
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g268350 HTR9 Histone H3; (1 of 35) K11253 - histone H3 (H3) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTCTTCACACCGCCGGTGGCGGGGGTCTTACGAGCGGCCTTGGTGGCCA
Internal bar code:GGCTATTCAGTCACAACGCCCA

Confirmation - LEAP-Seq

LEAP-Seq distance:379
LEAP-Seq percent confirming:5.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:19
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:CTTGGTGATGCCCTGGATGT
Suggested primer 2:TGACCGGTCGTTTGTCAGAG