Insertion junction: CLIP2.008185_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.008185
Chromosome:chromosome 6
Location:2380007
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g268350 HTR9 Histone H3; (1 of 35) K11253 - histone H3 (H3) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCTCATCGCTACCGCCCCGGTACCGTGGCGCTGCGCGAGATCCGCAAGT
Internal bar code:GGCTATTCAGTCACAACGCCCA

Confirmation - LEAP-Seq

LEAP-Seq distance:1249
LEAP-Seq percent confirming:32.8767
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:49
LEAP-Seq n unique pos:73

Suggested primers for confirmation by PCR

Suggested primer 1:TGACCGGTCGTTTGTCAGAG
Suggested primer 2:CTTGGTGATGCCCTGGATGT