Insertion junction: CLIP2.008373_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.008373
Chromosome:chromosome 3
Location:7932025
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g202300 (1 of 3) IPR000104//IPR001859 - Antifreeze protein, type I // Trypanosoma cruzi ribosomal protein P2-like intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACCATTGCCCTCTGCCATGCTAGCATGTGTGCGACCAGTGCGCGCTGGA
Internal bar code:GATCTACTATTTCACGCGTATT

Confirmation - LEAP-Seq

LEAP-Seq distance:4987
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:75
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:75

Suggested primers for confirmation by PCR

Suggested primer 1:CAGCGGCATTCATTGATGGG
Suggested primer 2:AGGGCGCTTCGAAACTTGTA