Insertion junction: CLIP2.008373_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.008373
Chromosome:chromosome 3
Location:7932036
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g202300 (1 of 3) IPR000104//IPR001859 - Antifreeze protein, type I // Trypanosoma cruzi ribosomal protein P2-like intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACAAACAAGCGAGGCTGACACTGCCAGTTCCGTCCCTGCTATCACATGCG
Internal bar code:GATCTACTATTTCACGCGTATT

Confirmation - LEAP-Seq

LEAP-Seq distance:2041
LEAP-Seq percent confirming:95.7447
LEAP-Seq n confirming:45
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:47

Suggested primers for confirmation by PCR

Suggested primer 1:AGGGCGCTTCGAAACTTGTA
Suggested primer 2:CAGCGGCATTCATTGATGGG