Insertion junction: CLIP2.008392_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.008392
Chromosome:chromosome 3
Location:4441639
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g800331 intron
lncRNA_TCONS_00070774 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGAGCTGTGGGGCGTGCCTTGTGATGCCCGGTGAGCGCTTCATCGACAAT
Internal bar code:GATTTGTGGTAGGGTTTCGCTA

Confirmation - LEAP-Seq

LEAP-Seq distance:3409
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:76
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:76

Suggested primers for confirmation by PCR

Suggested primer 1:AGCAATGCTTGACGACTCCA
Suggested primer 2:AAGGAGCGGTGTGTAACTGG