Insertion junction: CLIP2.008394_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.008394
Chromosome:chromosome 12
Location:6187433
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g535800 (1 of 1) PF13191//PF13424 - AAA ATPase domain (AAA_16) // Tetratricopeptide repeat (TPR_12) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACGCTCGCGCCCTCACACGCTCGCGCCCCCACACGCTCGCCCCCTGCAG
Internal bar code:GTCGAAAAAGTTATTATTGTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:319
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:GGCAAAGGTGGAAGCATGTG
Suggested primer 2:CGCCAAATCCATGTCGTTCC