Insertion junction: CLIP2.008471_3

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.008471
Chromosome:plastome
Location:181070
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802330 orf2971,ftsH,ChreCp065,2716962 ATP-dependent zinc metalloprotease; (1 of 752) IPR027417 - P-loop containing nucleoside triphosphate hydrolase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATACCCGTGAGAGAAGGGTATTTCTCGGTTGGGAACTTTAATTCAGAGTT
Internal bar code:TATGCCGTATCGAGGTTGATCA

Confirmation - LEAP-Seq

LEAP-Seq distance:246
LEAP-Seq percent confirming:20.3704
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:43
LEAP-Seq n unique pos:54

Suggested primers for confirmation by PCR

Suggested primer 1:TTTGACCTTCCTCTTCGCGT
Suggested primer 2:TGCACAGAGTGAAGTTGCCT