Insertion junction: CLIP2.008849_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.008849
Chromosome:chromosome 10
Location:5691713
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g459350 OPR49,RAP5 OctotricoPeptide Repeat protein 49; (1 of 2) IPR000104//IPR013584 - Antifreeze protein, type I // RAP domain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACGTGCTGCCAGGCATGGGGCTGGAGTTTGAGGTGGGGAGCGGCATGGT
Internal bar code:GCGTAACCGGCATGTTCGAGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:273
LEAP-Seq percent confirming:80.0
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:ATCCGATACAGCCTGCCATG
Suggested primer 2:CGTTTTGTGTCGTCTGCGTT