Insertion junction: CLIP2.008947_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.008947
Chromosome:chromosome 4
Location:1745558
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g212050 (1 of 2) IPR000104//IPR000253//IPR008984 - Antifreeze protein, type I // Forkhead-associated (FHA) domain // SMAD/FHA domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTACCTTCATGGTTTTTAAGAAGAAGCGGGATTGTAGCCAGAGGGCGGGG
Internal bar code:GGTCTTTAATTTTACCGTTTGT

Confirmation - LEAP-Seq

LEAP-Seq distance:222
LEAP-Seq percent confirming:20.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:CCCGTTCCTGACAACTTCGA
Suggested primer 2:CCGAATTCGCCAAATCGTCC