Insertion junction: CLIP2.009003_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.009003
Chromosome:chromosome 5
Location:3322236
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g232500 FXL8 (1 of 2) IPR000014//IPR011990 - PAS domain // Tetratricopeptide-like helical domain; FixL-like PAS domain protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGGGAGAAATGCGCATATTTGTGTGTGTGTGTGTGTTTGTGTGTTACAC
Internal bar code:GCCCAGAGCAGAGAGGTTGACT

Confirmation - LEAP-Seq

LEAP-Seq distance:112
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:ACACACACACACACGTGAGT
Suggested primer 2:TACCTCGCCCACAAGTTCAC