Insertion junction: CLIP2.009083_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.009083
Chromosome:chromosome 12
Location:4217143
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g518000 SCA2,SECA2 (1 of 1) PF01043//PF07517 - SecA preprotein cross-linking domain (SecA_PP_bind) // SecA DEAD-like domain (SecA_DEAD); Chloroplast-associated SecA protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGCACCGTGTCACTGCTGCAATGAACAATACGCGTAGCTCTCAGGCCCCG
Internal bar code:TCGACACTTGAATAGTTTTAGA

Confirmation - LEAP-Seq

LEAP-Seq distance:2955
LEAP-Seq percent confirming:3.33333
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:58
LEAP-Seq n unique pos:60

Suggested primers for confirmation by PCR

Suggested primer 1:CGTGTTTACGTGGTTGCGTT
Suggested primer 2:CCTTGTGGGTCCTGGACATC