Insertion junction: CLIP2.009101_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.009101
Chromosome:chromosome 5
Location:3062648
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g800572 (1 of 34) 2.4.2.41 - Xylogalacturonan beta-1,3-xylosyltransferase / Xylogalacturonan xylosyltransferase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCTAGTGGCAGGTGGGCGCGTTCCACACGCTCACCCCTAGGCACGCCCG
Internal bar code:TACATCGCAATGTCTGGGATGG

Confirmation - LEAP-Seq

LEAP-Seq distance:563
LEAP-Seq percent confirming:53.3333
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:CCCTTACCCCATCACAACCC
Suggested primer 2:GCCCCATCACCTTTGACTCA