Insertion junction: CLIP2.009121_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.009121
Chromosome:chromosome 12
Location:3046841
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g501450 SDIR1 RING finger-type E3 ligase, SDIR1 ortholog; (1 of 1) PTHR14155//PTHR14155:SF163 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACCTCCTCGTCCAGTGCCTGCAGCTGCGCATTGATGCGCTCGAGGGCGG
Internal bar code:TGCCATGGCCTTACGGGTTCTT

Confirmation - LEAP-Seq

LEAP-Seq distance:2212
LEAP-Seq percent confirming:95.5556
LEAP-Seq n confirming:43
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:45

Suggested primers for confirmation by PCR

Suggested primer 1:CAACCGCAGCTGACGAAAAA
Suggested primer 2:TGTGGAACTGGTGTAGGCAC