Insertion junction: CLIP2.009148_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.009148
Chromosome:chromosome 3
Location:517476
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g145127 ODA-DHCalpha,DHC13,ODA11 Outer Arm Dynein Heavy Chain alpha; (1 of 1) PF00630//PF01833//PF03028//PF07728//PF08393//PF12774//PF12775//PF12777//PF12780//PF12781//PF13418 - Filamin/ABP280 repeat (Filamin) // IPT/TIG domain (TIG) // Dynein heavy chain and region D6 of dynein motor (Dynein_heavy) // AAA domain (dynein-related subfamily) (AAA_5) // Dynein heavy chain, N-terminal region 2 (DHC_N2) // Hydrolytic ATP binding site of dynein motor region D1 (AAA_6) // P-loop containing dynein motor region D3 (AAA_7) // Microtubule-binding stalk of dynein motor (MT) // P-loop containing dynein motor region D4 (AAA_8) // ATP-binding dynein motor region D5 (AAA_9) // Galactose oxidase, central domain (Kelch_4) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCTTCACCACCTGGTCAACGCCGCGGAACACGTCCTCATCGCGGACCTG
Internal bar code:CTATAGGTTGCAGGCACTCTCC

Confirmation - LEAP-Seq

LEAP-Seq distance:4567
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:87
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:87

Suggested primers for confirmation by PCR

Suggested primer 1:CGCGGCTTCTTCAAGTATGC
Suggested primer 2:TTAACGGTGTGCACGTCGTA