Insertion junction: CLIP2.009224_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.009224
Chromosome:chromosome 3
Location:8809078
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre03.g206817 (1 of 2) IPR001739//IPR016177 - Methyl-CpG DNA binding // DNA-binding domain outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCGGCGACAAATTATCCTCCTTGCAGTCCGCCACTACGCTTCCCGCATA
Internal bar code:TTAGACCTGTACTAACTAAGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:359
LEAP-Seq percent confirming:29.4118
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:TGCCCCGTTCTGCATTGTAT
Suggested primer 2:CTTGCTGTTGCTGCAGTCAG