Insertion junction: CLIP2.009345_3

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.009345
Chromosome:chromosome 4
Location:3334701
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g227251 (1 of 1) IPR006626//IPR008752//IPR011050//IPR029018 - Parallel beta-helix repeat // Peptidase M11, gametolysin // Pectin lyase fold/virulence factor // Chitobiase/beta-hexosaminidase domain 2-like intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAAAGCAAGTTACGCATGCATCTAGCTATCCCAGTAGTACTAACCTTCCT
Internal bar code:GTGGCACTGCAATACGTTTTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1921
LEAP-Seq percent confirming:95.4545
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:GTAAGCACGACTGCATGCAG
Suggested primer 2:TTGTATCCGCCGTTTGCTCT