Insertion junction: CLIP2.009375_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.009375
Chromosome:plastome
Location:128335
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802317 atpH,ChreCp053,2717044 ATPase III subunit; (1 of 1) K02110 - F-type H+-transporting ATPase subunit c (ATPF0C, atpE) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTCGCTTTCATGGAATCTTTAACAATTTACGGTCTAGTTGTTGCTTTAG
Internal bar code:GTGAAAACATCGTAGAATGGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1054
LEAP-Seq percent confirming:63.6364
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:AAGGAAGCACCAAAGGCAGT
Suggested primer 2:CCTTCCGCAGAGGGTGAAAT