Insertion junction: CLIP2.009426_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.009426
Chromosome:chromosome 3
Location:5793992
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g187700 HEL19 (1 of 1) PTHR24031//PTHR24031:SF252 - RNA HELICASE // SUBFAMILY NOT NAMED; DEAD/DEAH box helicase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCATTTCCCCTCGCCCCCACCTCCATGTGGTAACGACTTCGTCTGCAGT
Internal bar code:TGATTATAAGCGCTTTGTGGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:508
LEAP-Seq percent confirming:83.3333
LEAP-Seq n confirming:25
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:GGGATGAGAGGGGAGAGGTT
Suggested primer 2:CCCGGTCAGCATTCTCCTTT