Insertion junction: CLIP2.009496_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.009496
Chromosome:chromosome 9
Location:2970617
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g393321 CSR12 (1 of 6) 2.8.2.33 - N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase / GalNAc4S-6ST; Carbohydrate sulfotransferase-related 12 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACTTGGTGGTGGTGAAGCCACTGATGGCTAGGGCTGACAAGCCCTAGTG
Internal bar code:AGTTTGTCGTATTCGGTAGCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1226
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:CGGCCTTGTGTGTGTTTCTG
Suggested primer 2:TAGAGGGAGGGGGAGCAGTA