Insertion junction: CLIP2.009539_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.009539
Chromosome:chromosome 8
Location:1501883
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g364850 AC115 putative ADP-ribosylglycosylhydrolase; (1 of 4) PTHR16222//PTHR16222:SF17 - ADP-RIBOSYLGLYCOHYDROLASE // SUBFAMILY NOT NAMED 3'UTR
Cre08.g364862 (1 of 1) PF07714//PF13185 - Protein tyrosine kinase (Pkinase_Tyr) // GAF domain (GAF_2) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTAAACTGCAAGGCTCACTCTTTGCTCGCCTCCAATAATTCTGCCATTGT
Internal bar code:CTTGGGGTAGAGACGCTATTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:2474
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:34
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:34

Suggested primers for confirmation by PCR

Suggested primer 1:GACACGCTGCTGCTTTGAAA
Suggested primer 2:CAGTGGGCGTTGGTTGAAAG