Insertion junction: CLIP2.009572_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.009572
Chromosome:chromosome 8
Location:4435570
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g385500 AMYA1,AMA1 Alpha-amylase 1; (1 of 3) K01176 - alpha-amylase (E3.2.1.1, amyA, malS) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGGATTGGAGCGGGGACGGTGTCGGGCAGAGGCGCGTGCCGGTACGAGG
Internal bar code:TGCAAGGAACCGACCAGCCATG

Confirmation - LEAP-Seq

LEAP-Seq distance:1785
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:AGCTGCTTCAAAAACGCCTG
Suggested primer 2:GGGGGTGGAATAAGCTACCG