Insertion junction: CLIP2.009583_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.009583
Chromosome:chromosome 12
Location:9694914
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00235904
lncRNA_TCONS_00236465

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAAGACTGGCTATATTGACTACAGCTCGCAGAAGCAGTAGCCAGCGGGCG
Internal bar code:GCTGAAGCGAAGGGTAAAACTA

Confirmation - LEAP-Seq

LEAP-Seq distance:2412
LEAP-Seq percent confirming:3.7037
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:26
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:TGAACAGGAGCTCAGCACTG
Suggested primer 2:ATAGTGAGGGAGGTTCGGCT