Insertion junction: CLIP2.009585_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.009585
Chromosome:chromosome 4
Location:1289519
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g214690 (1 of 1) PTHR22731:SF3 - RIBONUCLEASES P/MRP PROTEIN SUBUNIT POP1 5'UTR
Cre04.g214700 (1 of 4) PTHR12406//PTHR12406:SF27 - CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 IPLA2 -RELATED // SUBFAMILY NOT NAMED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAACCATGTCAACCACGTGCATATGTTTCGACGCTAATAAAGTTGCATAG
Internal bar code:ATCCTCAAAGGACGCAGGGGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:478
LEAP-Seq percent confirming:70.3704
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:ACGTCGGCACTTCACTTCAT
Suggested primer 2:TGGTAATTACAACCCCGCCC