Insertion junction: CLIP2.009791_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.009791
Chromosome:plastome
Location:50544
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802285 psbA,ChreCp021,2716969 (1 of 2) K02703 - photosystem II P680 reaction center D1 protein (psbA); photosystem II protein D1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GATATTTATATACTGCGATGTTTACATACTCCGAAGGAGGAAGCAGGCAG
Internal bar code:CTTTAGTTAAGCAGTCATCAGT

Confirmation - LEAP-Seq

LEAP-Seq distance:125
LEAP-Seq percent confirming:10.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:ACCACCGAATACACCAGCAA
Suggested primer 2:CCCCTACCAGGCTGTAAAGC