Insertion junction: CLIP2.009843_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.009843
Chromosome:plastome
Location:125392
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802314 2717041,ChreCp050,atpA (1 of 1) K02111 - F-type H+-transporting ATPase subunit alpha (ATPF1A, atpA); ATP synthase CF1 alpha chain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTAGCTAAGTAGCTACGTAAACCAGATAAGTATGCACGTACTTGTGATA
Internal bar code:TAGGGTATTGGATCTGAAAACC

Confirmation - LEAP-Seq

LEAP-Seq distance:776
LEAP-Seq percent confirming:10.989
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:81
LEAP-Seq n unique pos:91

Suggested primers for confirmation by PCR

Suggested primer 1:GCCCAGCGATTAACGTAGGT
Suggested primer 2:GGGTTACGAGCAGGGTCATT