Insertion junction: CLIP2.009926_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.009926
Chromosome:chromosome 17
Location:2754666
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g717850 PHC8 (1 of 1) IPR003882//IPR024616//IPR027417 - Pistil-specific extensin-like protein // Pherophorin // P-loop containing nucleoside triphosphate hydrolase; Pherophorin-chlamydomonas homolog 8 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCTAGGTAGCGCGCTTGCGTCGTTAGCGGGCCGACTGGTGCGTTGGTTG
Internal bar code:ATTTAGCTAGTTCCGTGAGCTA

Confirmation - LEAP-Seq

LEAP-Seq distance:2328
LEAP-Seq percent confirming:91.7808
LEAP-Seq n confirming:67
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:73

Suggested primers for confirmation by PCR

Suggested primer 1:GCGAGTCTTCTGGGTGACAA
Suggested primer 2:GTGATGCAAATCTCCGCACC