Insertion junction: CLIP2.009929_3

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.009929
Chromosome:chromosome 3
Location:3668034
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre50.g761447 (1 of 1) K03500 - 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] (rsmB, sun) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGCGTTGCCGCAGCACGCTGTGCCCGCTGCACCACGCGTACTACAACTC
Internal bar code:AATTGGGACAGAAGGTTTGACT

Confirmation - LEAP-Seq

LEAP-Seq distance:1163
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:TCCCCATGCACCTATACCCA
Suggested primer 2:CACGAACTGTCCTCTCCCAC