Insertion junction: CLIP2.009999_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.009999
Chromosome:chromosome 1
Location:4923474
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00004889

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCTTTGGAGGGGCTTAGAGCTCCGCGGGGTGGGCCAGAGGGTGCTCACG
Internal bar code:TGCGATCAGGCGCAGCATGGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1462
LEAP-Seq percent confirming:88.3117
LEAP-Seq n confirming:68
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:77

Suggested primers for confirmation by PCR

Suggested primer 1:CGCTGGAAAGAACGCGTATG
Suggested primer 2:ACCACTGAGAGCGGGATTTG